PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0223
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 207aa    MW: 23296.5 Da    PI: 8.4624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0223genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw++yl
      Gh_D06G0223 14 KGPWSPEEDAKLKAYIENYGTGgNWISLPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding40.46.6e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEde++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Gh_D06G0223  69 GGFSEEEDEIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.636962IPR017930Myb domain
SuperFamilySSF466893.8E-2711109IPR009057Homeodomain-like
SMARTSM007173.4E-121364IPR001005SANT/Myb domain
PfamPF002492.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-251569IPR009057Homeodomain-like
CDDcd001671.88E-91662No hitNo description
PROSITE profilePS5129422.07163117IPR017930Myb domain
SMARTSM007172.9E-1167115IPR001005SANT/Myb domain
PfamPF002492.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2470117IPR009057Homeodomain-like
CDDcd001672.07E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE NYGTGGNWIS LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDEIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
YPRPEPPFPV VPVPYSSQEQ SIQFTNSQCS VVDGANMEQH MLQGQTSSSS LNGMGLLYGE  180
DIINDTSSLV CLGMFQHYAF NDRISLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527240.0KM052724.1 Gossypium hirsutum RAX-like transcription factor RAX5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449046.11e-153PREDICTED: transcription factor RAX3-like
SwissprotQ9FKL23e-81MYB36_ARATH; Transcription factor MYB36
SwissprotQ9M2Y92e-81RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A089NBF51e-153A0A089NBF5_G
TrEMBLA0A0D2V4U31e-153A0A0D2V4U3_G
STRINGGLYMA11G04880.21e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-83myb domain protein 84